Package: ubiquity
Type: Package
Title: PKPD, PBPK, and Systems Pharmacology Modeling Tools
Version: 2.1.1
Authors@R: c(person("John", "Harrold", 
                     role    = c("aut", "cre"),
                     email   = "john.m.harrold@gmail.com",
                     comment = c(ORCID="0000-0003-2052-4373")))
Maintainer: John Harrold <john.m.harrold@gmail.com>
Description: Complete work flow for the analysis of pharmacokinetic
        pharmacodynamic (PKPD), physiologically-based pharmacokinetic
        (PBPK) and systems pharmacology models including: creation of
        ordinary differential equation-based models, pooled parameter
        estimation, individual/population based simulations, rule-based
        simulations for clinical trial design and modeling assays,
        deployment with a customizable 'Shiny' app, and
        non-compartmental analysis. System-specific analysis templates
        can be generated and each element includes integrated reporting
        with 'PowerPoint' and 'Word'.
URL: https://r.ubiquity.tools
SystemRequirements: Perl
BugReports: https://github.com/john-harrold/ubiquity/issues
License: BSD_2_clause + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.2.0)
Imports: cli, deSolve, dplyr (>= 1.0.0), digest, doParallel, flextable,
        foreach, ggplot2, knitr, MASS, onbrand (>= 1.0.2), optimx,
        PKNCA, pso, readxl, rmarkdown, rhandsontable, scales, stats,
        stringr, shiny,
Suggests: babelmixr2, FME, GA, GGally, gridGraphics, gridExtra, grid,
        officer, parallelPSO, ppso, rxode2, webshot, ggrepel,
        rstudioapi, testthat
VignetteBuilder: knitr
RoxygenNote: 7.3.3
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libfribidi-dev make libharfbuzz-dev libicu-dev
        libjpeg-dev libpng-dev libtiff-dev libuv1-dev libwebp-dev
        libxml2-dev libssl-dev perl zlib1g-dev
Repository: https://john-harrold.r-universe.dev
Date/Publication: 2026-01-07 14:02:01 UTC
RemoteUrl: https://github.com/john-harrold/ubiquity
RemoteRef: HEAD
RemoteSha: a6af2e725cf95dd6fd02a88e264757aff6576c95
NeedsCompilation: no
Packaged: 2026-06-07 07:13:56 UTC; root
Author: John Harrold [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-2052-4373>)