onbrand - Templated Reporting Workflows in Word and PowerPoint

Automated reporting in Word and PowerPoint can require customization for each organizational template. This package works around this by adding standard reporting functions and an abstraction layer to facilitate automated reporting workflows that can be replicated across different organizational templates.

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8.47 score 26 stars 4 dependents 59 scripts 395 downloads

formods - 'Shiny' Modules for General Tasks

'Shiny' apps can often make use of the same key elements, this package provides modules for common tasks (data upload, wrangling data, figure generation and saving the app state), and also a framework for developing. These modules can react and interact as well as generate code to create reproducible analyses.

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7.99 score 9 stars 1 dependents 161 scripts 257 downloads

ruminate - A Pharmacometrics Data Transformation and Analysis Tool

Exploration of pharmacometrics data involves both general tools (transformation and plotting) and specific techniques (non-compartmental analysis). This kind of exploration is generally accomplished by utilizing different packages. The purpose of 'ruminate' is to create a 'shiny' interface to make these tools more broadly available while creating reproducible results. Currently there are modules for uploading one or more datasets, data wrangling, plot genreation, non-compartmental analysis, construction of ODE-based models, and constructing and running adaptive trial simualtions. Analyses can be saved and reloaded later. It's possible to create workflows to automate analyses. There is integrated reporting in Word, Powerpoint and Excel. You can also generate scripts to replicate what was done in the app to create a stand-alone script to run in validated environments.

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7.17 score 5 stars 135 scripts 224 downloads

ubiquity - PKPD, PBPK, and Systems Pharmacology Modeling Tools

Complete work flow for the analysis of pharmacokinetic pharmacodynamic (PKPD), physiologically-based pharmacokinetic (PBPK) and systems pharmacology models including: creation of ordinary differential equation-based models, pooled parameter estimation, individual/population based simulations, rule-based simulations for clinical trial design and modeling assays, deployment with a customizable 'Shiny' app, and non-compartmental analysis. System-specific analysis templates can be generated and each element includes integrated reporting with 'PowerPoint' and 'Word'.

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modelingpkpd

6.59 score 14 stars 35 scripts 315 downloads

nlmixr2rpt - Templated Word and PowerPoint Reporting of 'nlmixr2' Fitting Results

This allows you to generate reporting workflows around 'nlmixr2' analyses with outputs in Word and PowerPoint. You can specify figures, tables and report structure in a user-definable 'YAML' file. Also you can use the internal functions to access the figures and tables to allow their including in other outputs (e.g. R Markdown).

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5.45 score 5 stars 14 scripts 239 downloads